PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g060780.1
Common NameMTR_5g060780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 400aa    MW: 44396.4 Da    PI: 6.4021
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g060780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14114205399
                      EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      k+lt+sd ++   l++p ++ + +    +++  +s+ +t++d+++++W+ +++y+++s    l +GW +Fv++++L ++D+vvF   ++s ++ 
  Medtr5g060780.1 114 KTLTQSDCTRV--LCVPIECSNLIfpklDLD--KSQSITVTDLKNQEWRYTYTYSNSS---RLHTGWLNFVREKKLVANDSVVFI--KNSAGKI 198
                      67766666654..777877764448866556..56679999***********988888...4899********************..779**** PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                       v+++r+
  Medtr5g060780.1 199 SVGIRRN 205
                      ****997 PP

2Auxin_resp43.11.8e-15229313182
       Auxin_resp   1 aahaastksvFevvYnPras.tseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsL 82 
                      aa+ a+++++F+vvY+P as + +Fvv ++ v +a+k+ +  GmR+k+ + + +ss+ ++      Gt++ v + +    +  +Wr L
  Medtr5g060780.1 229 AAELAEKNTAFDVVYYPTASgWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSNSKMtisqlKGTISFVFNHS---SNVPNWRIL 313
                      688999***********986489*************************9999888887764333445555554422...344568877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-18108205IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.518110206IPR003340B3 DNA binding domain
CDDcd100172.81E-13111204No hitNo description
Gene3DG3DSA:2.40.330.101.7E-19111207IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-7112206IPR003340B3 DNA binding domain
PfamPF023622.6E-11113205IPR003340B3 DNA binding domain
PfamPF065078.0E-13229313IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSLPLPPRVD PKIWQICVGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS  60
IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD  120
CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQEWRYT YTYSNSSRLH TGWLNFVREK  180
KLVANDSVVF IKNSAGKISV GIRRNTKFTT DEAAEGSENL TDEIKVLDAA ELAEKNTAFD  240
VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV  300
FNHSSNVPNW RILEVNWDGL DIPQIPNLVN PWQVEVYNIH APSTSSSTVN NPRLAESSSP  360
QQIPYSMPGT SGPMSQAPSE VSSLAYLCNI GLQSQLGTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-421234322361Auxin response factor 1
4ldy_B1e-421234322361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614882.20.0auxin response factor-like protein
TrEMBLG7K9180.0G7K918_MEDTR; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.17e-59auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]